Complete Map of the Nectria haematococca MP VI MAK1 Chromosome
Complete Map of the Nectria haematococca MP VI MAK1 Chromosome
The binary hybridization matrix representing the complete map of the MAK1 chromosome is
composed of 33 STS probes and 199 linked cosmid clones. The hybridization fingerprints of
clones are indicated in rows and the hybridization fingerprints of probes are indicated in columns.
The vertical order of probes (numbers immediately to the left of clone names) is identical to the
order of probes across the columns. Hybridization of a probe to a clone is indicated by a 1; lack of
hybridization is indicated by a dot. Ordered probes are divided into eight contigs by vertical dashed
lines.
Estimated physical size = 1.52 Mb
Estimated coverage = 95%
Key for features in map:
S = S-clone, or single-chromosome clone
R = R-clone, or repeat-containing clone
(i.e. repeats on >1 chromosome)
N = Nht1-containing clone
J = JE9-containing clone
H = HR1-containing clone
----- Gap closed via PCR amplification
==== Gap closed via restriction enzyme mapping
++++ Unclosed gap
* Clones positive with telomere-derived probe
Actual cosmids from which Nht1, JE9 and HR1 were cloned
are indicated on the far right by Nht1,
JE9 and HR1, respectively.
__ _____________________________________________________
1G12 1...........|.|....|.|.....|..|......|.. R *
5FO5 1...........|.|....|.|.....|..|......|.. R *
4HO3 1...........|.|....|.|.....|..|......|.. R *
2CO2 1...........|.|....|.|.....|..|......|.. R *
4H12 1...........|.|....|.|.....|..|......|.. S
5FO1 1...........|.|....|.|.....|..|......|.. S
2AO7 1...........|.|....|.|.....|..|......|.. S
11 5DO1 1...........|.|....|.|.....|..|......|.. S
4FO1 1...........|.|....|.|.....|..|......|.. S
4EO4 1...........|.|....|.|.....|..|......|.. S
2HO6 1...........|.|....|.|.....|..|......|.. S
5AO9 11..........|.|....|.|.....|..|......|.. S
4DO5 11..........|.|....|.|.....|..|......|.. S
2H11 .1..........|.|....|.|.....|..|......|.. S
25 4D11 .1..........|.|....|.|.....|..|......|.. S
4BO1 .11.........|.|....|.|.....|..|......|.. S N
2BO6 .11.........|.|....|.|.....|..|......|.. S N
4CO5 .11.........|.|....|.|.....|..|......|.. S N
5E1O .11.........|.|....|.|.....|..|......|.. S N
1HO4 .11.........|.|....|.|.....|..|......|.. S N
3G11 ..1.........|.|....|.|.....|..|......|.. S
2C1O ..1.........|.|....|.|.....|..|......|.. S
15 1DO8 ..1.........|.|....|.|.....|..|......|.. S
2AO6 ..11........|.|....|.|.....|..|......|.. S J
3E12 ..11........|.|....|.|.....|..|......|.. S J
3FO1 ..11........|.|....|.|.....|..|......|.. S J
4H11 ..11........|.|....|.|.....|..|......|.. S JH
1D11 ..11........|.|....|.|.....|..|......|.. S JH
2G1O ...1........|.|....|.|.....|..|......|.. S J
2AO8 ...1........|.|....|.|.....|..|......|.. S J
4GO1 ...1........|.|....|.|.....|..|......|.. R H
5EO8 ...1........|.|....|.|.....|..|......|.. R H
1AO4 ...1........|.|....|.|.....|..|......|.. S
3 1GO2 ...1........|.|....|.|.....|..|......|.. S
1AO5 ...1........|.|....|.|.....|..|......|.. S
2CO3 ...1........|.|....|.|.....|..|......|.. R
3C11 ...1........|.|....|.|.....|..|......|.. R
2GO6 ...1........|.|....|.|.....|..|......|.. R
2D1O ...1........|.|....|.|.....|..|......|.. R
5DO5 ...1........|.|....|.|.....|..|......|.. R N
1BO6 ...11.......|.|....|.|.....|..|......|.. R N
1EO6 ...11.......|.|....|.|.....|..|......|.. R N
2BO9 ...11.......|.|....|.|.....|..|......|.. R N
2D11 ....1.......|.|....|.|.....|..|......|.. R N Nht1A
3BO2 ....1.......|.|....|.|.....|..|......|.. S N
2A12 ....1.......|.|....|.|.....|..|......|.. S N
4C1O ....1.......|.|....|.|.....|..|......|.. S N
3GO1 ....1.......|.|....|.|.....|..|......|.. S N
2EO4 ....1.......|.|....|.|.....|..|......|.. S N
6 2AO1 ....1.......|.|....|.|.....|..|......|.. S
5CO6 ....1.......|.|....|.|.....|..|......|.. S
4EO6 ....1.......|.|....|.|.....|..|......|.. S
5E11 ....1.......|.|....|.|.....|..|......|.. S
4E1O ....1.......|.|....|.|.....|..|......|.. S
2A11 ....1.......|.|....|.|.....|..|......|.. S
1CO2 ....11......|.|....|.|.....|..|......|.. S
1HO3 ....11......|.|....|.|.....|..|......|.. S
5BO1 .....1......|.|....|.|.....|..|......|.. S
29 2GO3 .....11.....|.|....|.|.....|..|......|.. S
4DO8 .....11.....|.|....|.|.....|..|......|.. S
3AO6 .....11.....|.|....|.|.....|..|......|.. S
5AO5 .....11.....|.|....|.|.....|..|......|.. S
3AO8 .....11.....|.|....|.|.....|..|......|.. R
5 1BO7 .....11.....|.|....|.|.....|..|......|.. S
3AO7 .....11.....|.|....|.|.....|..|......|.. S
1HO1 ......1.....|.|....|.|.....|..|......|.. S H
5BO7 ......1.....|.|....|.|.....|..|......|.. S JH
2B11 ......11....|.|....|.|.....|..|......|.. S
3G12 ......11....|.|....|.|.....|..|......|.. S H
1F1O ......11....|.|....|.|.....|..|......|.. S H
5B11 ......11....|.|....|.|.....|..|......|.. S JH
3DO6 ......11....|.|....|.|.....|..|......|.. S JH
2GO5 ......11....|.|....|.|.....|..|......|.. S JH
30 4A12 .......11...|.|....|.|.....|..|......|.. R J
1 1FO7 .......11...|.|....|.|.....|..|......|.. S N MAK1
4F11 ........11..|.|....|.|.....|..|......|.. R N
4HO6 ........11..|.|....|.|.....|..|......|.. S N
3D11 ........11..|.|....|.|.....|..|......|.. S
4FO3 ........11..|.|....|.|.....|..|......|.. S
5DO9 ........11..|.|....|.|.....|..|......|.. S
3CO9 ........11..|.|....|.|.....|..|......|.. S
4FO4 ........11..|.|....|.|.....|..|......|.. S
5EO6 ........11..|.|....|.|.....|..|......|.. S
1E1O ........11..|.|....|.|.....|..|......|.. S
4EO3 ........11..|.|....|.|.....|..|......|.. S
2BO3 .........1..|.|....|.|.....|..|......|.. S
21 5FO3 .........1..|.|....|.|.....|..|......|.. S
4CO3 .........1..|.|....|.|.....|..|......|.. S
3CO4 .........1..|.|....|.|.....|..|......|.. S
5BO6 .........11.|.|....|.|.....|..|......|.. S
26 2HO2 ..........11|.|....|.|.....|..|......|.. S
32 4AO8 ..........11|.|....|.|.....|..|......|.. R
2HO7 ...........1|.|....|.|.....|..|......|.. R PDA6-1
2EO9 ...........1|.|....|.|.....|..|......|.. S PDA6-1
========================================================
5EO2 ............|1|....|.|.....|..|......|.. S N
1FO8 ............|1|....|.|.....|..|......|.. S
3EO1 ............|1|....|.|.....|..|......|.. S
2DO5 ............|1|....|.|.....|..|......|.. R
9 4AO5 ............|1|....|.|.....|..|......|.. S
1GO7 ............|1|....|.|.....|..|......|.. S H
4BO5 ............|1|....|.|.....|..|......|.. S H
4B1O ............|1|....|.|.....|..|......|.. S H
5CO3 ............|1|....|.|.....|..|......|.. S H
========================================================
22 4AO3 ............|.|1...|.|.....|..|......|.. S JH HR1
4GO3 ............|.|1...|.|.....|..|......|.. R J
4BO4 ............|.|11..|.|.....|..|......|.. S J
3B12 ............|.|11..|.|.....|..|......|.. R
33 4DO4 ............|.|.1..|.|.....|..|......|.. R
5E12 ............|.|.1..|.|.....|..|......|.. R
4DO3 ............|.|.1..|.|.....|..|......|.. R
4EO1 ............|.|.1..|.|.....|..|......|.. R
2EO2 ............|.|.11.|.|.....|..|......|.. R
4BO6 ............|.|..1.|.|.....|..|......|.. S
5DO3 ............|.|..1.|.|.....|..|......|.. S
31 2DO7 ............|.|..1.|.|.....|..|......|.. S
1B12 ............|.|..11|.|.....|..|......|.. S
1BO1 ............|.|..11|.|.....|..|......|.. S
5AO2 ............|.|..11|.|.....|..|......|.. S
5AO8 ............|.|..11|.|.....|..|......|.. S
2FO5 ............|.|..11|.|.....|..|......|.. S
5D12 ............|.|...1|.|.....|..|......|.. R
1BO2 ............|.|...1|.|.....|..|......|.. R
5A1O ............|.|...1|.|.....|..|......|.. S
4 3EO2 ............|.|...1|.|.....|..|......|.. S
========================================================
2BO5 ............|.|....|1|.....|..|......|.. S H
12 1BO9 ............|.|....|1|.....|..|......|.. S
2GO4 ............|.|....|1|.....|..|......|.. R
3A1O ............|.|....|1|.....|..|......|.. R
++++++++++++++++++++++++++++++++++++++++++++++++++++++++
4D1O ............|.|....|.|1....|..|......|.. S
14 5BO8 ............|.|....|.|1....|..|......|.. S H
5AO7 ............|.|....|.|1....|..|......|.. S H
1GO5 ............|.|....|.|11...|..|......|.. S H
3E1O ............|.|....|.|11...|..|......|.. S
3D12 ............|.|....|.|11...|..|......|.. S
3GO9 ............|.|....|.|.1...|..|......|.. S
16 4AO6 ............|.|....|.|.1...|..|......|.. S
1GO6 ............|.|....|.|.1...|..|......|.. S
2D12 ............|.|....|.|.1...|..|......|.. S
2DO9 ............|.|....|.|.1...|..|......|.. R
2E11 ............|.|....|.|.11..|..|......|.. S
2DO4 ............|.|....|.|.11..|..|......|.. S
4DO9 ............|.|....|.|.11..|..|......|.. S
1FO4 ............|.|....|.|.11..|..|......|.. S
2GO1 ............|.|....|.|..1..|..|......|.. S
18 4CO8 ............|.|....|.|..1..|..|......|.. S
3A11 ............|.|....|.|..1..|..|......|.. R
3EO7 ............|.|....|.|..11.|..|......|.. S
2FO1 ............|.|....|.|..11.|..|......|.. S
3FO5 ............|.|....|.|...1.|..|......|.. S
13 3BO4 ............|.|....|.|...1.|..|......|.. S
3FO6 ............|.|....|.|...1.|..|......|.. S
1HO7 ............|.|....|.|...11|..|......|.. S
1HO8 ............|.|....|.|...11|..|......|.. S
2E12 ............|.|....|.|...11|..|......|.. S
23 4H1O ............|.|....|.|....1|..|......|.. S
4A11 ............|.|....|.|....1|..|......|.. S
2F11 ............|.|....|.|....1|..|......|.. S
---------------------------------------------------- FR3
3A12 ............|.|....|.|.....|1.|......|.. S
1D1O ............|.|....|.|.....|1.|......|.. S
7 3FO3 ............|.|....|.|.....|1.|......|.. S N
5CO5 ............|.|....|.|.....|1.|......|.. S N
1C11 ............|.|....|.|.....|1.|......|.. S N
2HO8 ............|.|....|.|.....|11|......|.. S N Nht1C
5C1O ............|.|....|.|.....|11|......|.. S N
1BO8 ............|.|....|.|.....|11|......|.. S N
3B1O ............|.|....|.|.....|11|......|.. S N
2HO3 ............|.|....|.|.....|11|......|.. S N
3CO5 ............|.|....|.|.....|11|......|.. S
3CO7 ............|.|....|.|.....|11|......|.. S
4AO4 ............|.|....|.|.....|.1|......|.. S
4BO7 ............|.|....|.|.....|.1|......|.. S
1HO6 ............|.|....|.|.....|.1|......|.. S
1H1O ............|.|....|.|.....|.1|......|.. S
1FO5 ............|.|....|.|.....|.1|......|.. S
2B12 ............|.|....|.|.....|.1|......|.. S
17 5C12 ............|.|....|.|.....|.1|......|.. S
4BO8 ............|.|....|.|.....|.1|......|.. S
---------------------------------------------------- FR1
2 2AO3 ............|.|....|.|.....|..|1.....|.. S H
3D1O ............|.|....|.|.....|..|1.....|.. R
2FO4 ............|.|....|.|.....|..|11....|.. S H
3HO3 ............|.|....|.|.....|..|11....|.. S
3CO6 ............|.|....|.|.....|..|.1....|.. S
24 2H12 ............|.|....|.|.....|..|.1....|.. S
5CO4 ............|.|....|.|.....|..|.1....|.. S
1HO5 ............|.|....|.|.....|..|.1....|.. S
1DO4 ............|.|....|.|.....|..|.1....|.. S
3DO8 ............|.|....|.|.....|..|.11...|.. S
3G1O ............|.|....|.|.....|..|.11...|.. S
1GO3 ............|.|....|.|.....|..|.11...|.. S
1EO2 ............|.|....|.|.....|..|.11...|.. S
4EO8 ............|.|....|.|.....|..|..1...|.. S
2G11 ............|.|....|.|.....|..|..1...|.. S N
2AO9 ............|.|....|.|.....|..|..11..|.. S N
3CO1 ............|.|....|.|.....|..|..11..|.. S N
2A1O ............|.|....|.|.....|..|..11..|.. S N
1AO1 ............|.|....|.|.....|..|..11..|.. S N
2DO1 ............|.|....|.|.....|..|..11..|.. S N
4CO7 ............|.|....|.|.....|..|..11..|.. S N
8 5AO4 ............|.|....|.|.....|..|..11..|.. S
5AO6 ............|.|....|.|.....|..|..11..|.. S
28 3BO9 ............|.|....|.|.....|..|..11..|.. S
5EO7 ............|.|....|.|.....|..|..11..|.. S
4A1O ............|.|....|.|.....|..|..11..|.. R N
1DO7 ............|.|....|.|.....|..|...11.|.. R N
1AO8 ............|.|....|.|.....|..|...11.|.. R N Nht1B
4B11 ............|.|....|.|.....|..|....1.|.. R NJ JE9
5EO1 ............|.|....|.|.....|..|....1.|.. S J
4FO2 ............|.|....|.|.....|..|....1.|.. S J
3FO2 ............|.|....|.|.....|..|....1.|.. S
5EO5 ............|.|....|.|.....|..|....1.|.. S J
2F12 ............|.|....|.|.....|..|....1.|.. S
20 2CO6 ............|.|....|.|.....|..|....11|.. S J
2HO4 ............|.|....|.|.....|..|....11|.. S J
4EO7 ............|.|....|.|.....|..|....11|.. S J
2CO5 ............|.|....|.|.....|..|....11|.. R J
27 1HO2 ............|.|....|.|.....|..|....11|.. S
1CO7 ............|.|....|.|.....|..|.....1|.. S
2BO2 ............|.|....|.|.....|..|.....1|.. S
4HO9 ............|.|....|.|.....|..|.....1|.. S
---------------------------------------------------- FR13
3C12 ............|.|....|.|.....|..|......|1. S
19 1AO6 ............|.|....|.|.....|..|......|1. S J
2CO7 ............|.|....|.|.....|..|......|1. S J
2FO6 ............|.|....|.|.....|..|......|11 S J
4GO2 ............|.|....|.|.....|..|......|11 S
4HO1 ............|.|....|.|.....|..|......|11 S
4C11 ............|.|....|.|.....|..|......|11 R
4AO9 ............|.|....|.|.....|..|......|11 R
4G1O ............|.|....|.|.....|..|......|.1 R
5DO2 ............|.|....|.|.....|..|......|.1 S
10 2CO1 ............|.|....|.|.....|..|......|.1 S
3GO2 ............|.|....|.|.....|..|......|.1 S
1HO9 ............|.|....|.|.....|..|......|.1 R *
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