Aspergillus nidulans Chromosome III - Version 2 - Aligned with Genetic Map - 109 Probe Pools
MINIMAL MAP
Estimated Coverage = 100%
Estimated Physical Size = 3600 kb
KB LOCUS CLONE/CHROM CLONE 10 20 30 40 50 60 70 80 90 100
HYBR. NAME .........|.........|.........|.|........|.........|........|.|.........|.........|...|......|.....|....|..|.......
12345678 ------------------------------------------------------------------------------------------------------------------
|-0 M * SW28CO7 1..............................|...........................|.........................|............|.......|.......
| HHMH L RWO8CO9 11.............................|...........................|.........................|............|.......|.......
| H * SW29DO2 .11............................|...........................|.........................|............|.......|.......
|-50 L * SW19FO6 .11............................|...........................|.........................|............|.......|.......
| L M RL3OHO1 ..11.........................1.|...........................|.........................|............|.......|.......
| M * SL25DO3 ...11..........................|...........................|.........................|............|.......|.......
|-100 L * SW22B1O .1.11..................1.......|...........................|.........................|............|.......|.......
| L L M RWO2DO2 ....11.........................|...........................|.........................|............|.......|.......
|-150 L * SW3OA11 .....1.........................|.............1.............|......1..................|............|.......|.......
| M SLO8HO9 .....11........................|...........................|.........................|............|.......|.......
| H * SWO8BO8 ......111......................|...........................|.........................|............|.......|.......
| H * SLO9H12 .......1.......................|...........................|.........................|............|.......|.......
|-200 L * SL13HO3 ......111......................|...........................|.........................|............|.......|.......
| M MHL RW14GO6 ........11.....................|...........................|.........................|............|.......|...1...
|-250 samB M * SL19BO5 .......1.1.....................|...........................|.........................|............|.......|.......
| HMMMML M RW19HO5 .........11....................|.......................1...|.........................|............|.......|.......
|-300 M * SW25GO9 ..........1....................|...........................|.........................|............|.......|.......
| M MH RL29AO2 ..........11...................|...........................|.........................|............|.......|.......
|-350 H * SLO7G12 ...........1...................|...........................|.........................|............|.......|.......
| M SL11EO7 ...........11..................|...........................|.........................|............|.......|.......
|-400 M * SL28AO5 ............1..................|...........................|.........................|............|.......|.......
| M H RW3OHO5 ........1...11.................|...........................|.........................|............|.......|.......
| MM H L RW26CO6 .............1.................|...........................|.........................|............|.......|.......
| LM RLO7GO7 .............11................|...........................|.........................|............|.......|.......
|-450 M * SL11DO2 ..............1..1.............|...........................|.........................|............|.......|.......
| H H L RL14AO4 ..............111..............|..................1........|.........................|...1........|.....1.|.......
| H * SL27BO1 ...............1...............|...........................|.........................|............|.......|.......
|-500 M * SLO8D12 ...............11..............|...........................|.........................|............|.......|.......
| LHH H RL32AO2 ................11.............|...........................|.........................|.........1..|.......|.......
| H * SLO3D1O ........1........11............|...........................|.........................|............|.......|.......
|-550 M * SL25DO5 ..................1............|...........................|.........................|............|.......|.......
| LLH RW19FO2 ...........1.....1111.........1|...........................|1........................|............|1......|.......
| HLL H RW18HO7 ..................111..........|...........................|1........1...............|............|.......|.......
|-600 M * SLO5BO1 ....................1..........|...........................|.........................|............|.......|.......
| L SWO9BO6 ....................111........|...........................|.........................|............|.......|.......
| M * SL24F12 .....................1.........|...........................|.........................|............|.......|.......
|-650 H * SW23D12 .....................11........|...........................|.........................|............|.......|.......
| HMHHHL RWO5FO8 ......................11.......|...........................|.........................|............|.......|.......
| M * SL22C1O .......................1.......|...........................|.........................|............|.......|.......
|-700 M * SLO7AO1 .......................11......|...........................|.........................|............|.......|.......
| LM RW24FO4 ........................11.....|...........................|.........................|............|.......|.......
| H * SWO1AO6 .........................11....|...........................|.........................|............|.......|.......
| M * SW26FO4 ..........................11...|...........................|.........................|............|.......|.......
|-750 M * SL3OE11 ...........................1...|...........................|.........................|............|.......|.......
| M SLO9BO2 ...........................11..|...........................|.11......................|............|.......|.......
|-800 M * SLO7FO2 ............................1..|...........................|.........................|............|.......|.......
| H L L RWO3AO8 ............................11.|...........................|.........................|............|.......|1.....1
|-850 M * SL32AO5 .............................1.|...........................|.........................|............|.......|.......
| M SL22E11 ...........................1.11|...........................|.........................|............|.......|.......
|-900 M * SLO6A12 ..............................1|...........................|.........................|............|.......|.......
------------------------------------------------------------------------------------------------------------------
|-0 M * SL21CO4 ...............................|1..........................|.........................|............|.......|.......
| cen MHMMMHHM OW12A11 ..................1...11.......|11...1.............1....1..|..........1.......1......|............|.....1.|.......
|-50 (phytochrome) M * SW19GO3 ............................1..|.1.........................|.........................|............|.......|.......
| L H RL14HO6 ...............................|.11........................|.........................|............|.......|.......
|-100 M * SW19DO5 ...............................|..1........................|.........................|............|.......|.......
| L SW1OA1O ...............................|..11.......................|.........................|............|.......|.......
|-150 L * SWO5CO6 .....................1.........|...1.......................|.........................|1...........|.......|.......
| H M RW18AO9 ...............................|1..111.........1...........|........................1|..1....11...|.......|....1..
|-200 M * SL24F1O ...............................|.....1.....................|.........................|............|.......|.......
| M SW27HO4 ...............................|.....11....................|.........................|............|.......|.......
|-250 H * SWO5CO2 .......................1.......|......1....................|.........................|............|.......|.......
| LHHHLL RWO2CO6 ...............................|......11...............1...|.........................|............|.......|.......
| M * SL25GO2 ...............................|.......11..................|.........................|............|.......|.......
|-300 M * SL26F1O ...............................|........1..................|.........................|............|.......|.......
| LL RL12EO4 ...............................|........11.................|.........................|............|.......|.......
|-350 M * SW18H12 ...............................|.........1.................|.........................|............|.......|.......
| HL M RL11GO3 ...............................|.........11................|.........................|............|.......|.......
|-400 L * SL24GO2 ...............................|..........1................|.........................|............|.......|.......
| MM RW29CO5 ...............................|..........11...............|.........................|............|.......|.......
| cen HHHMHMLH OWO1GO4 .......1.......................|...........11..........1...|.........................|............|.......|.......
|-450 L * SL2OH11 ...............................|............1..............|.........................|............|.......|.......
| LM M RW3OEO4 ...............................|............11.............|.........................|..........1.|.....1.|.......
|-500 M * SLO7BO6 ...............................|.............1.............|.........................|............|.......|.......
| L SW14AO1 ...............................|.............11............|.........................|............|.......|.......
|-550 M * SWO2DO3 ...............................|..............1............|.........................|............|.......|.......
| cen HMHHHMMH OW14AO2 1..1................1..........|11............111...1..1...|........................1|............|11.....|.......
|-600 M * SW25HO1 ...............................|...............1...........|.........................|............|.......|.......
| samB M HM RL31GO8 ........1.....1..1...1..1..11..|..1...1........11..........|......1...1.........11...|............|1......|..1....
| LLMM L RWO7AO2 .........1.....................|................1..........|.........................|............|.......|.......
| LMM M L RW23CO9 ...............................|................111........|...............11........|............|.......|.......
|-650 M * SL16C1O ...............................|.................1.........|.........................|............|.......|.......
| HMM MMM RW23B12 ...............................|................111........|.........................|............|.......|.......
|-700 H * SLO5G11 ...............................|..................1........|.........................|............|.......|.......
| MLMHM RL32HO8 1..............................|..................11.......|..............1..........|............|..1....|.......
|-750 H * SW29EO9 ...............................|...................1.......|.........................|............|.......|.......
| M SL1OEO4 ...............................|...................11......|.........................|............|.......|.......
|-800 M * SL25HO5 ...............................|....................1......|.........................|............|.......|.......
| H SL1OAO4 ...............................|....................11.....|.........................|............|.......|....1..
| M * SLO8CO2 ...............................|.....................11....|.........................|............|.......|.......
|-850 M * SW24H12 ...............................|......................1....|.........................|............|.......|.......
| LM LM RW22GO9 .....1..............1..........|1.....................111..|...............1111.....1|1.....1.1...|1....11|.......
|-900 CEN M * SLO9DO9 ...............................|.......................1...|.........................|............|.......|.......
| MLMMHMMM OL18A11 ...............................|.......................11..|.........................|............|.......|1......
| L * SLO7AO7 ...............................|........................11.|.........................|............|.......|.......
| H * SW21HO7 ...............................|.............1...........1.|.........................|............|.......|.......
|-950 M * SL24EO7 ..1...........................1|.........................11|.......1.................|............|....1..|.......
| LL RW15GO3 ...............................|..........................1|.........................|............|.......|.......
------------------------------------------------------------------------------------------------------------------
|-0 M * SWO5G1O ...............................|...........................|1........................|............|.......|.......
| rodA H SW21HO6 ...............................|...........................|11.......................|............|.......|.......
|-50 L * SW21A12 ...............................|...........................|.1..................1....|............|.......|.......
| LMMH RW18CO2 1...........1..................|.....11.......111.........1|.11............1.........|............|.......|....11.
|-100 L * SL15BO6 ...............................|...........................|..1......................|............|.......|.......
| M M RL28E1O ...............................|...........................|..111....................|............|.......|.......
| (amdSI,bimB) M * SWO4EO6 ...............................|...........................|...11....................|............|.......|.......
|-150 M * SW29A12 ...............................|...........................|....1....................|............|.......|.......
| MLM RW18EO4 ..........................1....|...........................|....11...................|............|.......|.......
|-200 M * SLO4EO2 ...............................|...........................|.....1...................|............|.......|.......
| H SW1OAO8 ...............................|...........................|.....1111................|............|.......|.......
| M * SL18CO4 ...............................|...........................|......11.................|............|.......|.......
|-250 M * SL23D11 ...............................|...........................|......11.................|............|.......|.......
| M SWO8EO8 ...............................|...........................|......111................|............|.......|.......
|-300 M * SL21H11 ...............................|...........................|.......11................|............|.......|.......
| MH M RWO2E1O .................1......1...11.|...........................|........11...............|............|.......|.......
|-350 H * SL2OGO7 ...............................|...........................|.........1.............11|............|.......|.......
| L SW13AO9 ........1.......1..............|...........................|........11...........1...|............|.......|.......
| H SW19F12 .......1.......................|.................1.........|.........11.............1|............|.......|.......
|-400 L * SL16EO2 ...............................|...........................|..........1..............|............|.......|.......
| LL M RW3OAO7 ...............................|...........................|..........11.............|............|.......|.......
|-450 H * SWO8DO6 ...............................|...........................|...........1.............|............|.......|.......
| M SL23BO2 .....................1.........|...........................|..1........11.....1......|..1...1.1...|..1....|.......
| L * SW14EO4 ...............................|...........................|............1............|............|.......|.......
| H * SLO7EO1 ...............................|...........................|............111..........|...........1|.......|.......
| M * SW25GO6 ...............................|...........................|.............1...........|............|.......|.......
|-500 M * SL24BO2 ...............................|...........................|.............1...........|............|.......|.......
| M SL22FO4 ...............................|...........................|.............11..........|............|.......|.......
| LHL RW31B12 .............................1.|..................11...1...|..............11.........|.1.......1..|.......|.......
|-550 M * SL2OE11 ...............................|...........................|...............1.........|............|.......|.......
| H SWO2DO9 ...............................|...........................|...............11........|............|.......|.......
| M * SL12CO3 ...............................|...........................|................1........|............|.......|.......
|-600 H * SW13DO1 ...............................|...........................|................11.......|............|.......|.......
| M SL1OHO6 ...............................|...........................|...............1111......|............|.......|.......
| M * SW14A12 ...............................|...........................|..................1......|............|.......|.......
|-650 M * SW18HO3 ...............................|...........................|..................11.....|............|..11...|.......
| MLMLMM L RW23FO1 ...............................|...........................|...................11....|............|.......|.......
|-700 M * SLO4F1O ...............................|...........................|....................1....|............|.......|.......
| MMMHMM RWO3BO8 ....1..........................|...........................|....1...............11...|............|.......|.......
|-750 nimA H * SLO4F11 ...............................|...........................|.....................1...|............|.......|.......
| M HM RLO6HO8 ...............................|...........................|.....................11..|............|.......|.......
|-800 M * SL21EO9 ...............................|...........................|......................1..|............|.......|.......
| MH L RLO5H1O ...............................|.........1.................|.........1....1.......11.|............|.......|.......
|-850 M * SW28C1O ..........1....................|...........................|.......................1.|............|.......|.......
| H SW15DO4 ...............................|...........................|.......................1.|............|.......|.......
| M SL19HO2 ...............................|...........................|.......................11|............|.......|.......
|-900 L * SL12GO7 ...............................|...........................|........................1|............|.......|.......
------------------------------------------------------------------------------------------------------------------
|-0 M M RL28FO2 ...............................|...........................|.........................|1...........|.......|.......
| M SW26GO7 ...............................|...........................|.........................|1111........|.......|.......
|-50 L * SW17GO6 ...............................|...........................|.........................|.11.........|.......|.......
| MH L RL22CO8 ...............................|...........................|.........................|..11........|.......|.......
|-100 M * SL23DO4 ............1..................|...........................|.........................|...1........|.......|.......
| MH M RLO9A12 ...............................|...........................|.........................|...11.....1.|.......|.......
|-150 H * SWO9CO4 ...............................|...........................|.........................|....1.......|.......|.......
| M SW19DO8 ...............................|...........................|.........................|....111.....|.......|.......
| M * SL2OAO8 ...............................|...........................|.........................|.....1......|.......|.......
|-200 M * SW23DO1 ...............................|...........................|.........................|.....11.....|.......|.......
| H SW19D11 ...............................|...........................|.........................|......11....|.......|.......
|-250 M * SL28HO9 ...............................|...........................|.........................|.......1....|.......|.......
| MLH MM RWO2BO2 1..1...........................|.1..................1..1...|...............1.........|......111...|11...1.|.......
| M * SWO6CO9 ...............................|...........................|.........................|........1...|.......|.......
|-300 H * SW14DO9 ...............................|...........................|.........................|........111.|.......|.......
| L SWO9FO6 ...............................|...........................|.........................|.........11.|.......|.......
|-350 L * SW22CO1 ...............................|...........................|.........................|..........1.|.......|.......
| MHL M RW22CO4 ...............................|...........................|.........................|..........11|.......|.......
|-400 H * SW11BO1 ...............................|...........................|.........................|...........1|.......|.......
| L H RLO9GO3 ...............................|...........................|.........................|...........1|.......|.......
------------------------------------------------------------------------------------------------------------------
|-0 H * SL25AO1 ...............................|...........................|.........................|............|1......|.......
| L H RL18BO8 ...............................|...........1...............|.........................|............|11.....|.......
| MM M RL11GO8 ...............................|...........................|.........................|............|.11....|.......
|-50 H * SW1OHO7 ...............................|...........................|.........................|............|..1....|.......
| L SW27GO8 ...1.................1.........|...1....1..............1...|....1...1.........111111.|..1.........|..111..|......1
|-100 L * SW27CO9 ...............................|...........................|.........................|............|...1...|.......
| L M RW29CO1 .......................1.......|...........................|.........................|......1.....|...11..|.......
|-150 L * SW16B11 ...............................|...........................|.........................|.1..........|....1..|.......
| L H RW19DO6 ...............................|...........................|.........................|............|....11.|.......
|-200 L * SWO4BO7 ...............................|...........................|.........................|............|.....1.|.......
| HLHMHL RW16EO6 ..1.......1....1....11.1...1...|1.1...............11.......|....................1..11|.1....1.....|....111|....11.
| cen LMLMLMLH OW14AO4 ...............................|...........................|.........................|............|......1|.......
|-250 M * SL15HO8 ...............................|...........................|.........................|............|......1|.......
------------------------------------------------------------------------------------------------------------------
|-0 L * SLO6GO3 ...............................|...........................|.........................|............|.......|1......
| LML HL M RW26AO8 ...............................|.......1...............11..|.........................|............|.......|11.....
|-50 M * SWO3FO1 ...............................|...........................|.........................|............|.......|.1.....
| H SW21CO2 ...............................|...........................|.........................|............|.......|.11....
|-100 M * SL21E11 ...............................|...........................|.........................|............|.......|..1....
| HM RL26EO9 ...............................|.1.........................|....1............11......|............|.......|..11...
| M H RLO3AO5 ...............................|...........................|.........................|............|.......|...1...
| HH HLL RW19GO7 ...............................|...........................|............1..1.........|............|.......|...11..
|-150 (areA) L * SW28G12 ...............................|...........................|.........................|............|.......|....1..
| L L L RW28FO5 ...............................|...........................|.........................|............|.......|....11.
| acoD M * SL12HO9 ...............................|...........................|.........................|............|.1.....|.....1.
| M * SW21HO8 ...............................|...........................|.........................|............|.......|.....11
|-200 L * SW23EO2 ...............................|...........................|.........................|............|.......|......1
------------------------------------------------------------------------------------------------------------------
In the first column a scale in kilobases (kb) is provided for the chromosome walk. The chromosome walk above is aligned with the genetic map.
In the second column Genetic loci assigned to cosmids are found. Cosmids, which hybridize to another complementing
clone or to a clone, which hybridizes to a gene probe, are given in parantheses. The parantheses
around the locus name implies that the cosmid listed by name in the same row has not been
shown to complement directly a mutation at the genetic locus or hybridize directly to a gene probe.
CEN denotes the predicted location of the centromere, while cen in lowercase denotes a centromeric repeat.
In the third column hybridization of the clone to each chromosome is scored as high (H), medium (M), or low (L).
In the fourth column the star (*) denotes that the cosmid was used as a probe.
In the fifth column is the clone name.
NOTES ON THE PHYSICAL MAP:
The original physical map had 2 contigs. 4 breaks were introduced at putative false joins to align the genetic and physical maps.
Clone L24BO2 doesn't hybridize to itself.
ablA: One complementing clone for ablA was deleted from this map because it falls next to the other two complementing clones on VI.
acoD: The second to last acoD clone should be moved next to other two, and it was. This makes the right arm a little long with respect to the genetic map.
bimE: The bimE clone was deleted from this map because it maps to another chromosome.
phytochrome: lo6fo8 (3,6), l12co5 (8), l14b1o (3,5), l14co1 (3,5), l21a11 (4), l26b11 (8), l27go5 (6). Phytochrome may not be on III.
riboB: The one clone W91CO1 for riboB was removed. The riboB gene is on VIII.
samB: The gene samB has two noncontiguous sets of clones that hybridize to the gene.