Fungal Genome Resource Home -> N. haematococca MP VI MAK1 Physical Map

Complete Map of the Nectria haematococca MP VI MAK1 Chromosome



Complete Map of the Nectria haematococca MP VI MAK1 Chromosome
The binary hybridization matrix representing the complete map of the MAK1 chromosome is 
composed of 33 STS probes and 199 linked cosmid clones.  The hybridization fingerprints of 
clones are indicated in rows and the hybridization fingerprints of probes are indicated in columns.  
The vertical order of probes (numbers immediately to the left of clone names) is identical to the 
order of probes across the columns.  Hybridization of a probe to a clone is indicated by a 1; lack of 
hybridization is indicated by a dot.  Ordered probes are divided into eight contigs by vertical dashed 
lines.

Estimated physical size = 1.52 Mb
Estimated coverage = 95%

Key for features in map:
S = S-clone, or single-chromosome clone
R = R-clone, or repeat-containing clone 
    (i.e. repeats on >1 chromosome)
N = Nht1-containing clone
J = JE9-containing clone
H = HR1-containing clone

-----	Gap closed via PCR amplification
==== 	Gap closed via restriction enzyme mapping	
++++	Unclosed gap 	
*	Clones positive with telomere-derived probe	

Actual cosmids from which Nht1, JE9 and HR1 were cloned 
are indicated on the far right by Nht1, 
JE9 and HR1, respectively.

__ _____________________________________________________
   1G12  1...........|.|....|.|.....|..|......|.. R * 
   5FO5  1...........|.|....|.|.....|..|......|.. R * 
   4HO3  1...........|.|....|.|.....|..|......|.. R * 
   2CO2  1...........|.|....|.|.....|..|......|.. R * 
   4H12  1...........|.|....|.|.....|..|......|.. S  
   5FO1  1...........|.|....|.|.....|..|......|.. S  
   2AO7  1...........|.|....|.|.....|..|......|.. S  
11 5DO1  1...........|.|....|.|.....|..|......|.. S  
   4FO1  1...........|.|....|.|.....|..|......|.. S  
   4EO4  1...........|.|....|.|.....|..|......|.. S  
   2HO6  1...........|.|....|.|.....|..|......|.. S  
   5AO9  11..........|.|....|.|.....|..|......|.. S  
   4DO5  11..........|.|....|.|.....|..|......|.. S  
   2H11  .1..........|.|....|.|.....|..|......|.. S  
25 4D11  .1..........|.|....|.|.....|..|......|.. S  
   4BO1  .11.........|.|....|.|.....|..|......|.. S  N
   2BO6  .11.........|.|....|.|.....|..|......|.. S  N
   4CO5  .11.........|.|....|.|.....|..|......|.. S  N
   5E1O  .11.........|.|....|.|.....|..|......|.. S  N
   1HO4  .11.........|.|....|.|.....|..|......|.. S  N
   3G11  ..1.........|.|....|.|.....|..|......|.. S  
   2C1O  ..1.........|.|....|.|.....|..|......|.. S  
15 1DO8  ..1.........|.|....|.|.....|..|......|.. S  
   2AO6  ..11........|.|....|.|.....|..|......|.. S   J
   3E12  ..11........|.|....|.|.....|..|......|.. S   J
   3FO1  ..11........|.|....|.|.....|..|......|.. S   J
   4H11  ..11........|.|....|.|.....|..|......|.. S   JH
   1D11  ..11........|.|....|.|.....|..|......|.. S   JH
   2G1O  ...1........|.|....|.|.....|..|......|.. S   J
   2AO8  ...1........|.|....|.|.....|..|......|.. S   J
   4GO1  ...1........|.|....|.|.....|..|......|.. R    H
   5EO8  ...1........|.|....|.|.....|..|......|.. R    H
   1AO4  ...1........|.|....|.|.....|..|......|.. S  
 3 1GO2  ...1........|.|....|.|.....|..|......|.. S  
   1AO5  ...1........|.|....|.|.....|..|......|.. S  
   2CO3  ...1........|.|....|.|.....|..|......|.. R  
   3C11  ...1........|.|....|.|.....|..|......|.. R  
   2GO6  ...1........|.|....|.|.....|..|......|.. R  
   2D1O  ...1........|.|....|.|.....|..|......|.. R  
   5DO5  ...1........|.|....|.|.....|..|......|.. R  N
   1BO6  ...11.......|.|....|.|.....|..|......|.. R  N
   1EO6  ...11.......|.|....|.|.....|..|......|.. R  N
   2BO9  ...11.......|.|....|.|.....|..|......|.. R  N
   2D11  ....1.......|.|....|.|.....|..|......|.. R  N  Nht1A
   3BO2  ....1.......|.|....|.|.....|..|......|.. S  N
   2A12  ....1.......|.|....|.|.....|..|......|.. S  N
   4C1O  ....1.......|.|....|.|.....|..|......|.. S  N
   3GO1  ....1.......|.|....|.|.....|..|......|.. S  N
   2EO4  ....1.......|.|....|.|.....|..|......|.. S  N
 6 2AO1  ....1.......|.|....|.|.....|..|......|.. S  
   5CO6  ....1.......|.|....|.|.....|..|......|.. S  
   4EO6  ....1.......|.|....|.|.....|..|......|.. S  
   5E11  ....1.......|.|....|.|.....|..|......|.. S  
   4E1O  ....1.......|.|....|.|.....|..|......|.. S  
   2A11  ....1.......|.|....|.|.....|..|......|.. S  
   1CO2  ....11......|.|....|.|.....|..|......|.. S  
   1HO3  ....11......|.|....|.|.....|..|......|.. S  
   5BO1  .....1......|.|....|.|.....|..|......|.. S  
29 2GO3  .....11.....|.|....|.|.....|..|......|.. S  
   4DO8  .....11.....|.|....|.|.....|..|......|.. S  
   3AO6  .....11.....|.|....|.|.....|..|......|.. S  
   5AO5  .....11.....|.|....|.|.....|..|......|.. S  
   3AO8  .....11.....|.|....|.|.....|..|......|.. R  
 5 1BO7  .....11.....|.|....|.|.....|..|......|.. S  
   3AO7  .....11.....|.|....|.|.....|..|......|.. S  
   1HO1  ......1.....|.|....|.|.....|..|......|.. S    H
   5BO7  ......1.....|.|....|.|.....|..|......|.. S   JH
   2B11  ......11....|.|....|.|.....|..|......|.. S  
   3G12  ......11....|.|....|.|.....|..|......|.. S    H
   1F1O  ......11....|.|....|.|.....|..|......|.. S    H
   5B11  ......11....|.|....|.|.....|..|......|.. S   JH
   3DO6  ......11....|.|....|.|.....|..|......|.. S   JH
   2GO5  ......11....|.|....|.|.....|..|......|.. S   JH
30 4A12  .......11...|.|....|.|.....|..|......|.. R   J
 1 1FO7  .......11...|.|....|.|.....|..|......|.. S  N  MAK1
   4F11  ........11..|.|....|.|.....|..|......|.. R  N
   4HO6  ........11..|.|....|.|.....|..|......|.. S  N
   3D11  ........11..|.|....|.|.....|..|......|.. S  
   4FO3  ........11..|.|....|.|.....|..|......|.. S  
   5DO9  ........11..|.|....|.|.....|..|......|.. S  
   3CO9  ........11..|.|....|.|.....|..|......|.. S  
   4FO4  ........11..|.|....|.|.....|..|......|.. S  
   5EO6  ........11..|.|....|.|.....|..|......|.. S  
   1E1O  ........11..|.|....|.|.....|..|......|.. S  
   4EO3  ........11..|.|....|.|.....|..|......|.. S  
   2BO3  .........1..|.|....|.|.....|..|......|.. S  
21 5FO3  .........1..|.|....|.|.....|..|......|.. S  
   4CO3  .........1..|.|....|.|.....|..|......|.. S  
   3CO4  .........1..|.|....|.|.....|..|......|.. S  
   5BO6  .........11.|.|....|.|.....|..|......|.. S  
26 2HO2  ..........11|.|....|.|.....|..|......|.. S  
32 4AO8  ..........11|.|....|.|.....|..|......|.. R  
   2HO7  ...........1|.|....|.|.....|..|......|.. R    PDA6-1
   2EO9  ...........1|.|....|.|.....|..|......|.. S    PDA6-1
========================================================
   5EO2  ............|1|....|.|.....|..|......|.. S  N
   1FO8  ............|1|....|.|.....|..|......|.. S  
   3EO1  ............|1|....|.|.....|..|......|.. S  
   2DO5  ............|1|....|.|.....|..|......|.. R  
 9 4AO5  ............|1|....|.|.....|..|......|.. S  
   1GO7  ............|1|....|.|.....|..|......|.. S    H
   4BO5  ............|1|....|.|.....|..|......|.. S    H
   4B1O  ............|1|....|.|.....|..|......|.. S    H
   5CO3  ............|1|....|.|.....|..|......|.. S    H
========================================================
22 4AO3  ............|.|1...|.|.....|..|......|.. S   JH HR1
   4GO3  ............|.|1...|.|.....|..|......|.. R   J
   4BO4  ............|.|11..|.|.....|..|......|.. S   J
   3B12  ............|.|11..|.|.....|..|......|.. R  
33 4DO4  ............|.|.1..|.|.....|..|......|.. R  
   5E12  ............|.|.1..|.|.....|..|......|.. R  
   4DO3  ............|.|.1..|.|.....|..|......|.. R  
   4EO1  ............|.|.1..|.|.....|..|......|.. R  
   2EO2  ............|.|.11.|.|.....|..|......|.. R  
   4BO6  ............|.|..1.|.|.....|..|......|.. S  
   5DO3  ............|.|..1.|.|.....|..|......|.. S  
31 2DO7  ............|.|..1.|.|.....|..|......|.. S  
   1B12  ............|.|..11|.|.....|..|......|.. S  
   1BO1  ............|.|..11|.|.....|..|......|.. S  
   5AO2  ............|.|..11|.|.....|..|......|.. S  
   5AO8  ............|.|..11|.|.....|..|......|.. S  
   2FO5  ............|.|..11|.|.....|..|......|.. S  
   5D12  ............|.|...1|.|.....|..|......|.. R  
   1BO2  ............|.|...1|.|.....|..|......|.. R  
   5A1O  ............|.|...1|.|.....|..|......|.. S  
 4 3EO2  ............|.|...1|.|.....|..|......|.. S  
========================================================
   2BO5  ............|.|....|1|.....|..|......|.. S    H
12 1BO9  ............|.|....|1|.....|..|......|.. S  
   2GO4  ............|.|....|1|.....|..|......|.. R  
   3A1O  ............|.|....|1|.....|..|......|.. R  

++++++++++++++++++++++++++++++++++++++++++++++++++++++++

   4D1O  ............|.|....|.|1....|..|......|.. S  
14 5BO8  ............|.|....|.|1....|..|......|.. S    H
   5AO7  ............|.|....|.|1....|..|......|.. S    H
   1GO5  ............|.|....|.|11...|..|......|.. S    H
   3E1O  ............|.|....|.|11...|..|......|.. S  
   3D12  ............|.|....|.|11...|..|......|.. S  
   3GO9  ............|.|....|.|.1...|..|......|.. S  
16 4AO6  ............|.|....|.|.1...|..|......|.. S  
   1GO6  ............|.|....|.|.1...|..|......|.. S  
   2D12  ............|.|....|.|.1...|..|......|.. S  
   2DO9  ............|.|....|.|.1...|..|......|.. R  
   2E11  ............|.|....|.|.11..|..|......|.. S  
   2DO4  ............|.|....|.|.11..|..|......|.. S  
   4DO9  ............|.|....|.|.11..|..|......|.. S  
   1FO4  ............|.|....|.|.11..|..|......|.. S  
   2GO1  ............|.|....|.|..1..|..|......|.. S  
18 4CO8  ............|.|....|.|..1..|..|......|.. S  
   3A11  ............|.|....|.|..1..|..|......|.. R  
   3EO7  ............|.|....|.|..11.|..|......|.. S  
   2FO1  ............|.|....|.|..11.|..|......|.. S  
   3FO5  ............|.|....|.|...1.|..|......|.. S  
13 3BO4  ............|.|....|.|...1.|..|......|.. S  
   3FO6  ............|.|....|.|...1.|..|......|.. S  
   1HO7  ............|.|....|.|...11|..|......|.. S  
   1HO8  ............|.|....|.|...11|..|......|.. S  
   2E12  ............|.|....|.|...11|..|......|.. S  
23 4H1O  ............|.|....|.|....1|..|......|.. S  
   4A11  ............|.|....|.|....1|..|......|.. S  
   2F11  ............|.|....|.|....1|..|......|.. S  
---------------------------------------------------- FR3 
   3A12  ............|.|....|.|.....|1.|......|.. S  
   1D1O  ............|.|....|.|.....|1.|......|.. S  
 7 3FO3  ............|.|....|.|.....|1.|......|.. S  N
   5CO5  ............|.|....|.|.....|1.|......|.. S  N
   1C11  ............|.|....|.|.....|1.|......|.. S  N
   2HO8  ............|.|....|.|.....|11|......|.. S  N  Nht1C
   5C1O  ............|.|....|.|.....|11|......|.. S  N
   1BO8  ............|.|....|.|.....|11|......|.. S  N
   3B1O  ............|.|....|.|.....|11|......|.. S  N
   2HO3  ............|.|....|.|.....|11|......|.. S  N
   3CO5  ............|.|....|.|.....|11|......|.. S  
   3CO7  ............|.|....|.|.....|11|......|.. S  
   4AO4  ............|.|....|.|.....|.1|......|.. S  
   4BO7  ............|.|....|.|.....|.1|......|.. S  
   1HO6  ............|.|....|.|.....|.1|......|.. S  
   1H1O  ............|.|....|.|.....|.1|......|.. S  
   1FO5  ............|.|....|.|.....|.1|......|.. S  
   2B12  ............|.|....|.|.....|.1|......|.. S  
17 5C12  ............|.|....|.|.....|.1|......|.. S  
   4BO8  ............|.|....|.|.....|.1|......|.. S  
---------------------------------------------------- FR1
 2 2AO3  ............|.|....|.|.....|..|1.....|.. S    H
   3D1O  ............|.|....|.|.....|..|1.....|.. R  
   2FO4  ............|.|....|.|.....|..|11....|.. S    H
   3HO3  ............|.|....|.|.....|..|11....|.. S  
   3CO6  ............|.|....|.|.....|..|.1....|.. S  
24 2H12  ............|.|....|.|.....|..|.1....|.. S  
   5CO4  ............|.|....|.|.....|..|.1....|.. S  
   1HO5  ............|.|....|.|.....|..|.1....|.. S  
   1DO4  ............|.|....|.|.....|..|.1....|.. S  
   3DO8  ............|.|....|.|.....|..|.11...|.. S  
   3G1O  ............|.|....|.|.....|..|.11...|.. S  
   1GO3  ............|.|....|.|.....|..|.11...|.. S  
   1EO2  ............|.|....|.|.....|..|.11...|.. S  
   4EO8  ............|.|....|.|.....|..|..1...|.. S  
   2G11  ............|.|....|.|.....|..|..1...|.. S  N
   2AO9  ............|.|....|.|.....|..|..11..|.. S  N
   3CO1  ............|.|....|.|.....|..|..11..|.. S  N
   2A1O  ............|.|....|.|.....|..|..11..|.. S  N
   1AO1  ............|.|....|.|.....|..|..11..|.. S  N
   2DO1  ............|.|....|.|.....|..|..11..|.. S  N
   4CO7  ............|.|....|.|.....|..|..11..|.. S  N
 8 5AO4  ............|.|....|.|.....|..|..11..|.. S  
   5AO6  ............|.|....|.|.....|..|..11..|.. S  
28 3BO9  ............|.|....|.|.....|..|..11..|.. S  
   5EO7  ............|.|....|.|.....|..|..11..|.. S  
   4A1O  ............|.|....|.|.....|..|..11..|.. R  N
   1DO7  ............|.|....|.|.....|..|...11.|.. R  N
   1AO8  ............|.|....|.|.....|..|...11.|.. R  N  Nht1B
   4B11  ............|.|....|.|.....|..|....1.|.. R  NJ JE9
   5EO1  ............|.|....|.|.....|..|....1.|.. S   J
   4FO2  ............|.|....|.|.....|..|....1.|.. S   J
   3FO2  ............|.|....|.|.....|..|....1.|.. S  
   5EO5  ............|.|....|.|.....|..|....1.|.. S   J
   2F12  ............|.|....|.|.....|..|....1.|.. S   
20 2CO6  ............|.|....|.|.....|..|....11|.. S   J
   2HO4  ............|.|....|.|.....|..|....11|.. S   J
   4EO7  ............|.|....|.|.....|..|....11|.. S   J
   2CO5  ............|.|....|.|.....|..|....11|.. R   J
27 1HO2  ............|.|....|.|.....|..|....11|.. S  
   1CO7  ............|.|....|.|.....|..|.....1|.. S  
   2BO2  ............|.|....|.|.....|..|.....1|.. S  
   4HO9  ............|.|....|.|.....|..|.....1|.. S  
---------------------------------------------------- FR13
   3C12  ............|.|....|.|.....|..|......|1. S  
19 1AO6  ............|.|....|.|.....|..|......|1. S   J
   2CO7  ............|.|....|.|.....|..|......|1. S   J
   2FO6  ............|.|....|.|.....|..|......|11 S   J
   4GO2  ............|.|....|.|.....|..|......|11 S  
   4HO1  ............|.|....|.|.....|..|......|11 S  
   4C11  ............|.|....|.|.....|..|......|11 R  
   4AO9  ............|.|....|.|.....|..|......|11 R  
   4G1O  ............|.|....|.|.....|..|......|.1 R  
   5DO2  ............|.|....|.|.....|..|......|.1 S  
10 2CO1  ............|.|....|.|.....|..|......|.1 S  
   3GO2  ............|.|....|.|.....|..|......|.1 S  
   1HO9  ............|.|....|.|.....|..|......|.1 R *  
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