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repressilator2 [ Hydrogen repressilator ]
Species Name
Initial Concentration
jfix (constant, trapezoidal, rectangle)
npulse
Sequence
lacI^0
tetR^0
cI^0
lacI^1
tetR^1
cI^1
lacI^r
tetR^r
cI^r
lacI^p
tetR^p
cI^p
lacIcx^p
tetRcx^p
cIcx^p
Reactions
forward
backward
lacI^0 <--> lacI^1
tetR^0 <--> tetR^1
cI^0 <--> cI^1
lacI^1 + cIcx^p <--> lacI^0
tetR^1 + lacIcx^p <--> tetR^0
cI^1 + tetRcx^p <--> cI^0
lacI^1 <--> lacI^1 + lacI^r
tetR^1 <--> tetR^1 + tetR^r
cI^1 <--> cI^1 + cI^r
lacI^r <--> lacI^r + lacI^p
tetR^r <--> tetR^r + tetR^p
cI^r <--> cI^r + cI^p
lacI^r <-->
tetR^r <-->
cI^r <-->
lacI^p <-->
tetR^p <-->
cI^p <-->
lacI^p + lacI^p <--> lacIcx^p
tetR^p + tetR^p <--> tetRcx^p
cI^p + cI^p <--> cIcx^p
Inital
Time
Final
Time
Number of
Time Steps
Skip
Integration
Option
Euler
Euler Modified
Fourth Order Runge-Kutta
Adaptive Runge-Kutta
BDF order 2
LSODES
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