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repressilator.txt [ SAMPLE ]
Species Name
Initial Concentration
jfix (constant, trapezoidal, rectangle)
npulse
Sequence
lacIo
lacI1
lacIr
lacIp
tetRo
tetR1
tetTRr
tetRp
cIo
cI1
cIr
cIp
Reactions
forward
backward
lacI1 + cIp <--> lacIo
lacIo <--> lacI1
lacI1 <--> lacIr + lacI1
lacIr <-->
lacIr <--> lacIp + lacIr
lacIp <-->
tetR1 + lacIp <--> tetRo
tetRo <--> tetR1
tetR1 <--> tetTRr + tetR1
tetTRr <-->
tetTRr <--> tetRp + tetTRr
tetRp <-->
cI1 + tetRp <--> cIo
cIo <--> cI1
cI1 <--> cIr + cI1
cIr <-->
cIr <--> cIp + cIr
cIp <-->
Inital
Time
Final
Time
Number of
Time Steps
Skip
Integration
Option
Euler
Euler Modified
Fourth Order Runge-Kutta
Adaptive Runge-Kutta
BDF order 2
LSODES
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