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Adam Repressilator [ SAMPLE ]
Species Name
Initial Concentration
jfix (constant, trapezoidal, rectangle)
npulse
Sequence
LacI0
LacI1
LacIr
LacIp
tetR0
tetR1
tetRr
tetRp
cI0
cI1
cIr
cIp
Reactions
forward
backward
LacI0 <--> LacI1
LacI1 + cIp + cIp <--> LacI0
LacI1 <--> LacI1 + LacIr
LacIr <--> LacIr + LacIp
LacIr <-->
LacIp <-->
tetR0 <--> tetR1
tetR1 + LacIp + LacIp <--> tetR0
tetR1 <--> tetR1 + tetRr
tetRr <--> tetRr + tetRp
tetRr <-->
tetRp <-->
cI0 <--> cI1
cI1 + tetRp + tetRp <--> cI0
cI1 <--> cI1 + cIr
cIr <--> cIr + cIp
cIr <-->
cIp <-->
Inital
Time
Final
Time
Number of
Time Steps
Skip
Integration
Option
Euler
Euler Modified
Fourth Order Runge-Kutta
Adaptive Runge-Kutta
BDF order 2
LSODES
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